species:   Rhsol
pid:       PID0619
parent:    Rhi-milR-41
paralog:   
locus:     KB317782.1:26092-26166
matures:   ['CACCGAGAAGGCUGCUCUGUACUA', 'GUGCACCGUCGCUUUCUUGGCCAU']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317782.1:26092-26166

2 out of bounds
17 alignments
17 proper strand
17 stranded perfect matches

         **************************    ***************************         
CCCACCGAUGAGUGCACCGUCGCUUUCUUGGCCAUGCACCUCACCGAGAAGGCUGCUCUGUACUACGAAGGAGGC
.((.((..((((((((..((.((((((((((............)))))))))).))..)))))).))..)).)).
-----------------------------------------CACCGAGAAGGCUGCUCUGUACUA---------- l=24 a=0 c
-----------GUGCACCGUCGCUUUCUUGGCCAU---------------------------------------- l=24 a=0 c*
-----------------------------------------CACCGAGAAGGCUGCUCUGUACUAC--------- l=25 a=3 ma
-----------GUGCACCGUCGCUUUCUUGGCCAU---------------------------------------- l=24 a=0 ma*

----------AGUGCACCGUCGCUUUCUUGGC------------------------------------------- l=22 a=1 
--------------------------------------CCUCACCGAGAAGGCUGCUCUGUACUAC--------- l=28 a=1 
----------------------------------------UCACCGAGAAGGCUGCUCUGUACU----------- l=24 a=1 
----------------------------------------UCACCGAGAAGGCUGCUCUGUACUA---------- l=25 a=1 
----------------------------------------UCACCGAGAAGGCUGCUCUGUACUAC--------- l=26 a=1 
----------------------------------------UCACCGAGAAGGCUGCUCUGUACUACG-------- l=27 a=1 
-----------------------------------------CACCGAGAAGGCUGCUCUGUAC------------ l=22 a=3 
-----------------------------------------CACCGAGAAGGCUGCUCUGUACU----------- l=23 a=1 
-----------------------------------------CACCGAGAAGGCUGCUCUGUACUAC--------- l=25 a=3 (ma)
-----------------------------------------CACCGAGAAGGCUGCUCUGUACUACG-------- l=26 a=1 
------------------------------------------ACCGAGAAGGCUGCUCUGUACUAC--------- l=24 a=1 
------------------------------------------ACCGAGAAGGCUGCUCUGUACUACG-------- l=25 a=1 
-----------------------------------------------GAAGGCUGCUCUGUACUACGAAGGAG-- l=26 a=1 

mb-01011
ax-1001001
ku-01
ss-101011101110
fn-111
